Online
Octubre 23 - Octubre 24, 2020
9:00 am - 4:00 pm cada día
Instructors: Tito David Peña Montenegro
Helpers: Juan David Sánchez Calderón, Alejandro Cueto Becerra, Alberto Pérez Acosta, Janier Rosero Urbina
Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.
For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing".
Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.
Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting.
When: Octubre 23 - Octubre 24, 2020. Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).
Accessibility: We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you.
Contact: Please email davidpm@uga.edu for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.
Please be sure to complete these surveys before and after the workshop.
| Before | Pre-workshop survey |
| 09:00 | Setup and Intro |
| 09:30 | Python Fundamentals |
| 10:30 | Analyzing Patient Data |
| 11:30 | Visualizing Tabular Data (Part I) |
| 12:00 | Lunch break - QA session |
| 13:00 | Visualizing Tabular Data (Part II) |
| 13:30 | Repeating Actions with Loops |
| 14:00 | Storing Multiple Values in Lists |
| 15:00 | Analyzing Data from Multiple Files |
| 15:30 | Midterm |
| 16:00 | END |
| 09:00 | Setup |
| 09:30 | Making Choices |
| 10:00 | Creating Functions |
| 10:30 | Errors and Exceptions |
| 11:00 | Defensive Programming |
| 11:30 | Debugging (Part I) |
| 12:00 | Lunch Break |
| 13:00 | Debugging (Part II) |
| 13:30 | Command-Line Programs |
| 14:00 | Midterm |
| 15:00 | Wrap Up |
| 15:30 | Post-workshop Survey |
| 16:00 | END |
To participate in a Software Carpentry workshop, you will need access to the software described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
If you haven't used Zoom before, go to the official website to download and install the Zoom client for your computer.
Like other Carpentries workshops, you will be learning by "coding along" with the Instructors. To do this, you will need to have both the window for the tool you will be learning about (a terminal, RStudio, your web browser, etc..) and the window for the Zoom video conference client open. In order to see both at once, we recommend using one of the following set up options:
Python is a popular language for research computing, and great for general-purpose programming as well. Installing all of its research packages individually can be a bit difficult, so we recommend Anaconda, an all-in-one installer.
Regardless of how you choose to install it, please make sure you install Python version 3.x (e.g., 3.6 is fine).
We will teach Python using the Jupyter Notebook, a programming environment that runs in a web browser (Jupyter Notebook will be installed by Anaconda). For this to work you will need a reasonably up-to-date browser. The current versions of the Chrome, Safari and Firefox browsers are all supported (some older browsers, including Internet Explorer version 9 and below, are not).
bash Anaconda3-and then press Tab to autocomplete the full file name. The name of file you just downloaded should appear.
yes and press enter to approve the license.
Press Enter (or Return)
to approve the default location
for the files.
Type yes and press
Enter (or Return)
to prepend Anaconda to your PATH
(this makes the Anaconda distribution the default Python).